PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g11510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family C3H
Protein Properties Length: 356aa    MW: 39334.4 Da    PI: 8.0441
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g11510.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH361.2e-116793127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C+++ rtG C++G++C+F+H+p
  Vang06g11510.1 67 PGEPDCSYYIRTGLCRFGATCRFNHPP 93
                    5789*********************97 PP

2zf-CCCH31.43.2e-1098117827
                     GGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                     ++++tGtCk+G++CkF+H++
  Vang06g11510.1  98 YYLKTGTCKFGATCKFHHPK 117
                     8*****************96 PP

3zf-CCCH38.32.2e-12140163427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C +++rtG+Ck+G++CkF+H++
  Vang06g11510.1 140 PECTYYLRTGQCKFGNTCKFHHPQ 163
                     79********************97 PP

4zf-CCCH38.42.1e-12298323126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +++++C+f+++tG Ck+G+ C+F+H+
  Vang06g11510.1 298 PGQPECQFYMKTGDCKFGAVCRFHHP 323
                     5789*********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.5876694IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-56693IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-86893IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-57194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-47292IPR000571Zinc finger, CCCH-type
SMARTSM003560.02694117IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-898117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.47498118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-498117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.676136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5136163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6140164IPR000571Zinc finger, CCCH-type
PfamPF006425.8E-10140163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4142162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436297325IPR000571Zinc finger, CCCH-type
SMARTSM003569.4E-6297324IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9299323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5301326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5303325IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MRIERLMNGE EEAQRLVFVA TVCIDDVASV SLTSCCSRVY DVVSDSLWMM NLRSGETMDS  60
GAYPERPGEP DCSYYIRTGL CRFGATCRFN HPPNRKLYYL KTGTCKFGAT CKFHHPKDQA  120
GIAGRVALNT LGYPLRPNDP ECTYYLRTGQ CKFGNTCKFH HPQPSNMMLS LQDSSVYPTV  180
HSPTTPGQQS YAGGITNWSR ASYIPSPRWQ GPSSYAPLIL PQGVVSVPGW SAYGGQVGSI  240
STSDSHQQVM RNGQTYGTSR QGELANAGSH GAYSQFRSGT VPVGFYALQR ENIFPERPGQ  300
PECQFYMKTG DCKFGAVCRF HHPSERLIPA PDCVLSPMGL PLRPDFEFDN NLIQI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014514309.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A0S3SPV10.0A0A0S3SPV1_PHAAN; Uncharacterized protein
STRINGGLYMA20G36140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-128zinc finger protein 1